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CLI, Hardware, Virtualization

Proxmox Ceph storage configuration

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These are my notes for migrating my VM storage from NFS mount to Ceph hosted on Proxmox. I ran into a lot of bumps, but after getting proper server-grade SSDs, things have been humming smoothly long enough that it’s time to publish.

A note on SSDs

I had a significant amount of trouble getting ceph to work with consumer-grade SSDs. This is because ceph does a cache writeback call for each transaction – much like NFS. On my ZFS array, I could disable this, but not so for ceph. The result is very slow performance. It wasn’t until I got some Intel DC S3700 drives that ceph became reliable and fast. More details here.

Initial install

I used the Proxmox GUI to install ceph on each node by going to <host> / Ceph. Then I used the GUI to create a monitor, manager, and OSD on each host. Lastly, I used the GUI to create a ceph storage target in Datacenter config.

Small cluster (3 nodes)

My Proxmox cluster is small (3 nodes.) I discovered I didn’t have enough space for 3 replicas (the default ceph configuration), so I had to drop my pool size/min down to 2/1 despite warnings not to do so, since a 3-node cluster is a special case:

https://forum.proxmox.com/threads/ceph-pool-size-is-2-1-really-a-bad-idea.68939/#post-440755

More discussion: https://lists.ceph.io/hyperkitty/list/ceph-users@ceph.io/thread/UB44GH4Z2NJUV52ZTHKO4TGYEX3DZ4CB/

I have not had any problems with this configuration and it provides the space I need.

Ceph pool size

In my early testing, I discovered that if I removed a disk from pool, the size of the pool increased! After doing some reading in redhat documentation, I learned the basics of why this happened.

Size = number of copies of the data in the pool

Minsize = minimum number of copies before pool operation is suspended

I didn’t have enough space for 3 copies of the data. When I removed a disk, the pool it dropped down to the minsize setting (2 copies) – which I did have enough room for. The pool rebalanced to reflect this and it resulted in more space.

Configure Alerting

It turns out that alerting for problems with ceph OSDs and monitors does not come out of the box. You must configure it. Thanks to this thread and the ceph documentation for how to do so. I did this on each proxmox node.

apt install ceph-mgr-dashboard
ceph config set mgr mgr/alerts/smtp_host <MAIL_HOST>'
ceph config set mgr mrg/alerts/smtp_ssl false
ceph config set mgr mgr/alerts/smtp_ssl false
ceph config set mgr mgr/alerts/smtp_port 25
ceph config set mgr mgr/alerts/smtp_destination <DEST_EMAIL>
ceph config set mgr mgr/alerts/smtp_sender <SENDER_EMAIL>
ceph config set mgr mgr/alerts/smtp_from_name 'Proxmox Ceph Cluster'

Test this by telling ceph to send its alerts:

ceph alerts send

Move VM disks to Ceph storage

I ended up writing a simple for loop to move all my existing Proxmox VM disks onto my new ceph cluster. None of my VMs had more than 3 scsi devices. If your VMs have more than that you’ll have to tweak this rudimentary command:

for vm in $(qm list | awk '{print $1}'|grep -v VMID); do qm move-disk $vm scsi0 <CEPH_POOL_NAME>; qm move-disk $vm scsi1 <CEPH_POOL_NAME>; qm move-disk $vm scsi2 <CEPH_POOL_NAME>; done

Rename storage

I tried to edit /etc/pve/storage.cfg to change the name I gave my ceph cluster in Proxmox. That didn’t work (question mark next to the storage after renaming it) so I just removed and re-added instead.

Maintenance

Begin maintenance:

Ceph constantly tries to keep itself in balance. If you take a node down and it stays down for too long, ceph will begin to rebalance the data among the remaining nodes. If you’re doing short term maintenance, you can control this behavior to avoid unnecessary rebalance traffic.

ceph osd set nobackfill
ceph osd set norebalance

Reboot / perform OSD maintenance.

After maintenance is completed:

ceph osd unset nobackfill
ceph osd unset norebalance

Performance benchmark

I did a lot of performance checking when I first started to try and track down why the pool was so slow. In the end it was my consumer-grade SSDs. I’ll keep this section here for future reference.

Redhat article on ceph performance benchmarking

Ceph wiki on benchmarking

rados bench -p SSD 10 write --no-cleanup
rados bench -p SSD 10 seq
rados bench -p SSD 10 seq
rados bench -p SSD 10 rand
rbd create image01 --size 1024 --pool SSD
rbd map image01 --pool SSD --name client.admin
mkfs.ext4 /dev/rbd/SSD/image01  
mkdir /mnt/ceph-block-device
mount /dev/rbd/SSD/image01 /mnt/ceph-block-device/
rbd bench --io-type write image01 --pool=SSD
pveperf /mnt/ceph-block-device/
rados -p SSD cleanup

Undo:

 umount /mnt/ceph-block-device  
 rbd unmap image01 --pool SSD
 rbd rm image01 --pool SSD

MTU 9000 warning

I read that it was recommended to set network MTU to 9000 (jumbo frames. When I did this I experienced weird behavior, connection timeouts – ceph ground to a halt, complaining about slow OSDs, mons. It was too much hassle for me to troubleshoot, so I went back to the standard 1500 MTU.

Datacenter settings

I discovered you can have a host automatically migrate hosts off when you issue the reboot command via the migrate shutdown policy. https://pve.proxmox.com/wiki/High_Availability

Proxmox GUI / Datacenter / Options / HA Settings

Specify SSD or HDD for pools

I have not done this yet but here’s a link I found that explains how to do it: https://stackoverflow.com/questions/58060333/ceph-how-to-place-a-pool-on-specific-osd

Helpful commands

Determine IPs of OSDs: 

ceph osd dump - determine IPs of OSDs

Remove monitor from failed node:

ceph mon remove <host>
Also needs to be removed from /etc/ceph/ceph.conf

Configure Backup

I had been using ZFS snapshots and ZFS send to backup my VM disks before the move to ceph. While ceph has snapshot capability, it is slow and takes up extra space in the pool. My solution was to spin up a Proxmox Backup Server and regularly back up to that instead.

Proxmox backup server: can be installed to an existing PVE server if you desire:

https://pbs.proxmox.com/docs/installation.html

Configure the apt repository as follows:

# PBS pbs-no-subscription repository provided by proxmox.com,
# NOT recommended for production use
deb http://download.proxmox.com/debian/pbs bullseye pbs-no-subscription

# security updates
deb http://security.debian.org/debian-security bullseye-security main contrib

# apt-get update
# apt-get install proxmox-backup

I had to add a regular user and give admin permissions on PBS side, then add the host on the proxmox side using those credentials.

Configure automated backup in PVE via Datacenter tab / Backup.

Remember to configure automated verify jobs (scrubs).

Make sure to add an e-mail address for proxmox backup user for alerts.

Edit which account & e-mail is used, and how often notified, at the Datastore level.

Sync jobs

I wanted to synchronize my Proxmox Backup repository to a non-PBS server (simply host the files.) I accomplished this by doing the following:

  • Add 127.0.0.1 as a Remote host (Configuration / Remotes.) Copy the PBS server fingerprint from Certificates / Fingerprint.
  • Create remote datastore in /etc/fstab manually (I used SSHFS to backup to a synology over SSH.)
  • Add datastore in PBS, pointing to manual fstab mount. Then add sync job there

Import PBS datastore (in case of total crash)

I wanted to know how to import the data into a fresh instance of PBS. This is the procedcure:

edit /etc/proxmox-backup/datastore.cfg and add config about the datastore manually. Copy from existing datastore config for syntax.

Space still being taken up after deleting backups

PBS uses access time to determine if something has been touched. It waits 24 hours after the last touch. Garbage collection manually updates atime, but still recommended to keep atime on for the dataset PBS is using. Sources:

https://forum.proxmox.com/threads/zpool-atime-turned-off-effect-on-garbage-collection.76590/

https://pbs.proxmox.com/docs/backup-client.html#garbage-collection

Troubleshooting

Really slow VM IOPS during degrade / rebuild

This also ended up being due to having consumer-grade SSDs in my ceph pools. I’m keeping my notes for what I did to troubleshoot in case they’re useful.

https://forum.proxmox.com/threads/ceph-high-i-o-wait-on-osd-add-remove.20271/

Small cluster. Lower backfill activity so recovery doesn’t cause slowdown:

ceph config set osd osd_max_backfills 1
ceph config set osd osd_recovery_max_active 3

Verify setting was applied: https://www.suse.com/support/kb/doc/?id=000019693

ceph-conf --show-config|egrep "osd_max_backfills|osd_recovery_max_active"
ceph config dump | grep osd

Ramp up backfill performance:

ceph tell osd.* injectargs --osd_max_backfills=2 --osd-recovery_max_active=8 # 2x Increase
ceph tell osd.* injectargs --osd_max_backfills=3 --osd-recovery_max_active=12 # 3x Increase
ceph tell osd.* injectargs --osd_max_backfills=4 --osd_recovery_max_active=16 # 4x Increase
ceph tell osd.* injectargs --osd_max_backfills=1 --osd-recovery_max_active=3 # Back to Defaults

The above didn’t help, turns out consumer SSDs are very bad:

https://yourcmc.ru/wiki/Ceph_performance#General_benchmarking_principles

https://blog.cypressxt.net/hello-ceph-and-samsung-850-evo/

I bought some Intel DC S3700 on ebay for $75 a piece. It fixed all my latency/speed issues.

Dead mon despite being removed from cli

I had a situation where a monitor showed up as dead in proxmox, but I was unable to delete it. I followed this procedure:

rm /etc/systemd/system/ceph-mon.target.wants/ceph-mon@<nodename>.service

Dead pve node procedure

remove from /etc/ceph/ceph.conf, remove /var/lib/ceph/mon/ceph-<node>, remove rm /etc/systemd/system/ceph-mon.target.wants/ceph-mon@pve2.service

https://forum.proxmox.com/threads/ceph-cant-remove-monitor-with-unknown-status.63613/

Adding through GUI brought me back to the same problem.

Bring node back manually

https://docs.ceph.com/en/latest/rados/operations/add-or-rm-mons/

 ceph auth get mon. -o /tmp/key
 ceph mon getmap -o /tmp/map
 ceph-mon -i <node_name> –mkfs –monmap /tmp/map –keyring /tmp/key  
 ceph-mon -i <node_name> –public-addr <node_ip>:6789  
 ceph mon enable-msgr2
 vi /etc/pve/ceph.conf

In the end the most surefire way to fix this problem was to re-image the affected host.

Clear HEALTH_WARNING in GUI

In my testing I had tried pulling disks at random, then putting them back in. This recovered well, but I had this message:

HEALTH_WARN 1 daemons have recently crashed

To clear it I had to drop to the CLI and run this command:

ceph crash archive-all

Thanks to the Proxmox Forums for the fix.

Pool cleanup

I noticed I would get rbd error: rbd: listing images failed: (2) No such file or directory (500) when trying to look at which disks were on my Ceph pool. I fixed this by removing the offending images as per this post.

I then ran another rbd ls -l <POOL_NAME> command to see what was left and noticed several items without anything in the LOCK column. I discovered these were artifacts from failed disk migrations I tried early on – wasted space. I removed them one by one with the following command:

rbd rm <VM_FILE_NAME> -p <POOL_NAME>

Be careful to verify they’re not disks that are in use with VMs with are powered off – they will also show no lock for non-running VMs.

Disk errors

I had a disk fail, but then I pulled out the wrong disk. I kept getting these errors:

Warning: Error fsyncing/closing /dev/mapper/ceph--fc741b6c--499d--482e--9ea4--583652b541cc-osd--block--843cf28a--9be1--4286--a29c--b9c6848d33ba: Input/output error

I was unable to remove it from the GUI. After a while I realized the problem – I was on the wrong node. I needed to be on the node that has the disks when creating an OSD in the Proxmox GUI.

Steps to determine which disk is assigned to an OSD, from ceph docs:

ceph-volume lvm list
====== osd.2 =======

 [block]       /dev/ceph-680265f2-0b3c-4426-b2a8-acf2774d82e0/osd-block-2096f339-0572-4e1d-bf20-52335af9b374

     block device              /dev/ceph-680265f2-0b3c-4426-b2a8-acf2774d82e0/osd-block-2096f339-0572-4e1d-bf20-52335af9b374
     block uuid                tcnwFr-G33o-ybue-n0mP-cDpe-sp9y-d0gvYS
     cephx lockbox secret       
     cluster fsid              65f26da0-fca0-4419-ba15-20269a5a363f
     cluster name              ceph
     crush device class        ssd
     encrypted                 0
     osd fsid                  2096f339-0572-4e1d-bf20-52335af9b374
     osd id                    2
     osdspec affinity           
     type                      block
     vdo                       0
     devices                   /dev/sde
CLI, OS

Recover files from ZFS snapshot of ProxMox VM

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I recently needed to restore a specific file from one of my ProxMox VMs that had been deleted. I didn’t want to roll back the entire VM from a previous snapshot – I just wanted a single file from the snapshot. My snapshots are handled via ZFS using FreeNAS.

Since my VM was CentOS 7 it uses XFS, which made things a bit more difficult. I couldn’t find a way to crash-mount a read-only XFS snapshot – it simply resufed to mount, so I had to make everything read/write. Below is the process I used to recover my file:

On the FreeNAS server, find the snapshot you wish to clone:

sudo zfs list -t snapshot -o name -s creation -r DATASET_NAME

Next, clone the snapshot

sudo zfs clone SNAPSHOT_NAME CLONED_SNAPSHOT_NAME

Next, on a Linux box, use SSHFS to mount the snapshot:

mkdir Snapshot
sshfs -o allow_other user@freenas:/mnt/CLONED_SNAPSHOT_NAME Snapshot/

Now create a read/write loopback device following instructions found here:

sudo -i #easy lazy way to get past permissions issues
cd /path/to/Snapshot/folder/created/above
losetup -P -f VM_DISK_FILENAME.raw
losetup 
#Take note of output, it's likely set to /dev/loop0 unless you have other loopbacks

Note if your VM files are not in RAW format, extra steps will need to be taken in order to convert it to RAW format.

Now we have an SSH-mounted loopback device ready for mounting. Things are complicated if your VM uses LVM, which mine does (CentOS 7). Once the loopback device is set, lvscan should see the image’s logical volumes. Make the desired volume active

sudo lvscan
sudo lvchange -ay /dev/VG_NAME/LV_NAME

Now you can mount your volume:

mkdir Restore
mount /dev/VG_NAME/LV_NAME Restore/

Note: for XFS you must have read/write capability on the loopback device for this to work.

When you’re done, do your steps in reverse to unmount the snaspshot:

#Unmount snapshot
umount Restore
#Deactivate LVM
lvchange -an /dev/VG_NAME/LV_NAME
Remove loopback device
losetup -d /dev/loop0 #or whatever the loopback device was
#Unmount SSHfs mount to ZFS server
umount Snapshot

Finally, on the ZFS server, delete the snapshot:

sudo zfs destroy CLONED_SNAPSHOT_NAME

Troubleshooting

When I tried to mount the LVM partition at this point I got this error message:

mount: /dev/mapper/centos_plexlocal-root: can't read superblock

It ended up being because I was accidentally creating a read-only loopback device. I destroy the loopback device and re-created with write support and all was well.

CLI, OS

Mount folder from another system over SSH

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I recently had a need to mount a folder over SSH to allow my file manager to browse through the files on a remote system. Two great resources led me to the solution to this problem: sshfs

I first came across this little tutorial on how to install sshfs on my shiny new Linux Mint 18 box:

sudo apt-get install sshfs
sudo mkdir /mnt/droplet #<--replace "droplet" with whatever you prefer
sudo sshfs -o allow_other,defer_permissions root@xxx.xxx.xxx.xxx:/ /mnt/droplet

Pretty slick. If you want to use a keyfile instead of being prompted for a password, you can use the IdentityFile option:

sudo sshfs -o allow_other,defer_permissions,IdentityFile=~/.ssh/id_rsa root@xxx.xxx.xxx.xxx:/ /mnt/droplet

You can have this handled in /etc/fstab for automounting. Thanks to this Arch Linux guide for the info. (The command below requires systemd.)

user@host:/remote/folder /mount/point  fuse.sshfs noauto,x-systemd.automount,_netdev,users,idmap=user,IdentityFile=/home/user/.ssh/id_rsa,allow_other,reconnect 0 0

I tweaked my /etc/fstab file a bit because it complained that allow_other required a configuration change. Since I’m the only user of this box it didn’t matter to me. Here is my configuration:

nicholas@remote:/ /home/desktop/remote fuse.sshfs noauto,x-systemd.automount,_netdev,users,idmap=user,IdentityFile=/home/desktop/.ssh/keyfile,reconnect,allow_other 0 0

I’m mounting the root folder of my remote machine into a folder named remote on my desktop machine. I generated ssh keyfiles so that no password was required. Now the mount shows up under “Devices” in my file manager and a simple click mounts the folder gets me there. Sweet.

Edit 2/25/18: Added allow_other option per this article